Abstract
| Original language | English |
|---|---|
| Number of pages | 13 |
| Journal | PLOS one |
| Publication status | Published - 1 Apr 2015 |
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Keywords
- bioinformatics
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Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS. / Warris, Sven; Yalcin, Feyruz; Jackson, Katherine J.L. ; Nap, Jan Peter.
In: PLOS one, 01.04.2015.Research output: Contribution to journal › Article › Academic › peer-review
TY - JOUR
T1 - Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS
AU - Warris, Sven
AU - Yalcin, Feyruz
AU - Jackson, Katherine J.L.
AU - Nap, Jan Peter
PY - 2015/4/1
Y1 - 2015/4/1
N2 - To obtain large-scale sequence alignments in a fast and flexible way is an important step in the analyses of next generation sequencing data. Applications based on the Smith-Waterman (SW) algorithm are often either not fast enough, limited to dedicated tasks or not sufficiently accurate due to statistical issues. Current SW implementations that run on graphics hardware do not report the alignment details necessary for further analysis.
AB - To obtain large-scale sequence alignments in a fast and flexible way is an important step in the analyses of next generation sequencing data. Applications based on the Smith-Waterman (SW) algorithm are often either not fast enough, limited to dedicated tasks or not sufficiently accurate due to statistical issues. Current SW implementations that run on graphics hardware do not report the alignment details necessary for further analysis.
KW - bioinformatics
KW - bioinformatica
M3 - Article
JO - PLOS one
JF - PLOS one
SN - 1932-6203
ER -